<html><body><title>AT5G65320.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u526532001000i/AT5G65320.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u526532001000i/AT5G65320.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u526532001000i/AT5G65320.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325796001000i">AT3G57960.1</a></td><td>0.88261</td><td>emsy N terminus domain-containing protein / ENT domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324223001000i">AT3G42230.1</a></td><td>0.843351</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124238001000i">AT1G42380.1</a></td><td>0.842134</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521591001000i">AT5G15910.1</a></td><td>0.840484</td><td>dehydrogenase-related</td><td>OMAT5P005470</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121151001000i">AT1G11510.1</a></td><td>0.827014</td><td>DNA-binding storekeeper protein-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422025001000i">AT4G20250.1</a></td><td>0.823152</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u590000072000i">AtsnoR38Y-2</a></td><td>0.815505</td><td>AtsnoR38Y-2</td><td>OMAT5P115490</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525859501000i">AT5G58595.1</a></td><td>0.815505</td><td>snoRNA</td><td>OMAT5P115490</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125801001000i">AT1G58010.1</a></td><td>0.809458</td><td>pseudogene, putative ribosomal protein, blastp match of 70% identity and 8.4e-15 P-value to GP|5762260|dbj|BAA83471.1||AB008848 Csf-3 {Cucumis sativus}</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323135901000i">AT3G31359.1</a></td><td>0.803179</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523957001000i">AT5G39570.1</a></td><td>-0.853784</td><td>unknown protein</td><td>OMAT5P010670</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126626001000i">AT1G66260.1</a></td><td>-0.798035</td><td>RNA and export factor-binding protein, putative</td><td>OMAT1P116420</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321498001000i">AT3G14980.1</a></td><td>-0.781535</td><td>PHD finger transcription factor, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122044001000i">AT1G20440.1</a></td><td>-0.780045</td><td>COR47 (COLD-REGULATED 47)</td><td>OMAT1P106600</td><td>-</td><td>OMAT1P007480</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224073001000i">AT2G40730.1</a></td><td>-0.779887</td><td>HEAT repeat-containing protein</td><td>OMAT2P110120</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121483001000i">AT1G14830.1</a></td><td>-0.776186</td><td>ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)</td><td>OMAT1P104860</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524376001000i">AT5G43760.1</a></td><td>-0.774724</td><td>KCS20 (3-KETOACYL-COA SYNTHASE 20)</td><td>OMAT5P012090</td><td>-</td><td>OMAT5P110600</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423241001000i">AT4G32410.1</a></td><td>-0.772871</td><td>CESA1 (CELLULOSE SYNTHASE 1)</td><td>OMAT4P109240</td><td>-</td><td>OMAT4P010860</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325873001000i">AT3G58730.1</a></td><td>-0.769388</td><td>vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)</td><td>OMAT3P114560</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122939501000i">AT1G29395.1</a></td><td>-0.763979</td><td>COR414-TM1</td><td>OMAT1P109280</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u526532001000i/AT5G65320.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>17/200</td><td>2.02</td><td>2.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>51/200</td><td>2.17</td><td>2.04e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>51/200</td><td>2.17</td><td>2.06e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>element</td><td>-</td><td>51/200</td><td>2.13</td><td>3.80e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>value</td><td>-</td><td>40/200</td><td>2.38</td><td>7.43e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ty1_copia</td><td>-</td><td>12/200</td><td>4.05</td><td>1.02e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>retrotransposon</td><td>-</td><td>25/200</td><td>2.47</td><td>1.04e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>copia</td><td>-</td><td>12/200</td><td>4.00</td><td>1.16e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>polyprotein</td><td>-</td><td>13/200</td><td>3.61</td><td>1.76e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>identity</td><td>-</td><td>11/200</td><td>3.36</td><td>1.24e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>blastp</td><td>-</td><td>10/200</td><td>3.49</td><td>1.61e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>14/200</td><td>2.60</td><td>3.65e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pseudogene</td><td>-</td><td>21/200</td><td>2.04</td><td>6.94e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>10/200</td><td>2.15</td><td>7.56e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT5G65320.1
without_OMAT_gene
0.0